Table 12.2: Polarity scale for identifying transmembrane helices

Amino acid residue

Transfer free energy in kJ mol−1 (kcal mol−1)

Phe

15.5 (3.7)

Met

14.3 (3.4)

Ile  

13.0 (3.1)

Leu

11.8 (2.8)

Val

10.9 (2.6)

Cys

  8.4 (2.0)

Trp

  8.0 (1.9)

Ala

  6.7 (1.6)

Thr

  5.0 (1.2)

Gly

  4.2 (1.0)

Ser

  2.5 (0.6)

Pro

  −0.8 (−0.2)

Tyr

  −2.9 (−0.7)

His

  −12.6 (−3.0)

Gln

  −17.2 (−4.1)

Asn

  −20.2 (−4.8)

Glu

  −34.4 (−8.2)

Lys

  −37.0 (−8.8)

Asp

  −38.6 (−9.2)

Arg

  −51.7 (−12.3)

Source: Data from D. M. Engelman, T. A. Steitz, and A. Goldman. Annu. Rev. Biophys. Biophys. Chem. 15(1986):321–353.

Note: The free energies are for the transfer of an amino acid residue in an α helix from the membrane interior (assumed to have a dielectric constant of 2) to water.