Lowary, P.T., and J. Widom. 1998. New DNA sequence rules for high affinity binding to histone octamer and sequence-
In their efforts to define the rules for nucleosome positioning on DNA, Lowary and Widom obtained a library of 5 × 1012 DNA molecules, each with a different randomized sequence. All of the molecules were assembled from three synthesized segments of 72, 76, and 72 bp each, with two different 6 bp linkers that contained restriction sites. Each molecule was flanked by short segments of DNA that served as targets for PCR amplification. The total length of all the random DNA segments was 220 bp. The entire library was PCR-
Why was the random DNA length set at 220 bp?
Why were nucleosomes added at a level that could bind only 10% of the DNA molecules present?
What was the function of the high salt concentration?
Why was the DNA amplified by PCR in each cycle?