Overview
Assessment is woven into every aspect of How Life Works.
This instructor-only Learning Progression Guide shows the Learning Progression questions, with suggestions for how they might be used by an instructor—pre-class, in-class, post-class, and/or on exams. See the "BKQs" section for a full listing of all Basic Knowledge Questions. Finally, see the Pre-Made Assessments section to see how Learning Progression and Basic Knowledge questions can populate pre-made Pre-Class and, Homework assignments as well as an exam. Questions designed specifically for use in class can be downloaded by the instructor.
Learning Progression 4.1
Students should be able to answer the questions in this activity if they've mastered the following Core Concept:
The structural formula below is of two amino acids joined together to form a dipeptide. The carbons in this dipeptide are numbered 1 through 4. Use this formula to answer the question below.
This question engages students with the structure of amino acids, peptide bonds, polypeptides, functional groups.
Q: Draw two amino acids linked together by a covalent bond (that is, draw a dipeptide). Circle the peptide bond in your illustration. Label the alpha carbon atom(s), the hyhdrophobic side chain, the carboxyl group, and the amino group.
A:
The structural formula below is of two amino acids joined together to form a dipeptide. The carbons in this dipeptide are numbered 1 through 4. Use this formula to answer the question below.
This question engages students with the structure of amino acids, peptide bonds, polypeptides, functional groups.
Q: Draw two amino acids linked together by a covalent bond (that is, draw a dipeptide). Circle the peptide bond in your illustration. Label the alpha carbon atom(s), the hyhdrophobic side chain, the carboxyl group, and the amino group.
A:
The structural formula below is of two amino acids joined together to form a dipeptide. The carbons in this dipeptide are numbered 1 through 4. Use this formula to answer the question below.
This question engages students with the structure of amino acids, peptide bonds, polypeptides, functional groups.
Q: Draw two amino acids linked together by a covalent bond (that is, draw a dipeptide). Circle the peptide bond in your illustration. Label the alpha carbon atom(s), the hyhdrophobic side chain, the carboxyl group, and the amino group.
A:
The structural formula below is of two amino acids joined together to form a dipeptide. The carbons in this dipeptide are numbered 1 through 4. Use this formula to answer the question below.
This question engages students with the structure of amino acids, peptide bonds, polypeptides, functional groups.
Q: Draw two amino acids linked together by a covalent bond (that is, draw a dipeptide). Circle the peptide bond in your illustration. Label the alpha carbon atom(s), the hyhdrophobic side chain, the carboxyl group, and the amino group.
A:
This question engages students with the structure of amino acids and polypeptides, and reinforces the importance of condensation reactions in the synthesis of macromolecules.
Q: How many water molecules would be produced in making a polypeptide that is fourteen amino acids long?
A: Thirteen water molecules are formed by the thirteen condensation reactions that occur sequentially to join the fourteen amino acids.
Using “real world” language of science, this question reinforces the importance of the different bonds that stabilize the four levels of protein structure.
Q: The three dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The sentences below are from scientific articles on protein structure. For each of the sentences, indicate the level of protein structure (primary, secondary, tertiary, or quaternary) that applies best.
(Correct answers are indicated in parentheses)
The three-dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The following are sentences taken from scientific articles on protein structure. For each of the statements, choose the level of protein structure that applies best.
ArMlSAyhTK8qU2WQoLBay44CnuwFqSfEHB9UHbUkCjF1fql7eqJsDaHWMAh8I3+CpyzPEDcdv4Cu5isaS4KQ1vDdNQdBnZ79/R22wyiPvom2t3HWyijpOqw2FwF0AgcPfpSR1tLw6MyoB7qFLiixd1zTRirQAnS0Mx6okPU/bhiRwyjpz3MVzPZpqoJPN52kQQOEdJC8FdlfPDK+HKVkbOMYxtM=Using “real world” language of science, this question reinforces the importance of the different bonds that stabilize the four levels of protein structure.
Q: The three dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The sentences below are from scientific articles on protein structure. For each of the sentences, indicate the level of protein structure (primary, secondary, tertiary, or quaternary) that applies best.
(Correct answers are indicated in parentheses)
The three-dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The following are sentences taken from scientific articles on protein structure. For each of the statements, choose the level of protein structure that applies best.
iDXC4ArL4xrGd6j6UYCe1Ia5K3pktNiToA80fQwyXYrjuR04o6DZb8LiQ2yMF0ZHiEqeDa6z71CtwCgO+oXcL5qmwyCYCxQqSv4tz5MQddQ5OrjAVAqk+pS9Jk8Ar+hx6a4gXBqfJmN/9ml3XXTBlEwkQgpE54Kg+k0Lgg2ikoFyzBLuEGhKNDE44d6rImbT4vvPtUUV0ES3O1p4K9XUPw+Hnbi4bW/FOb8yczWjQSBG+c6JslGo1NCvo5QylnEZnZoM9Ur2DeoJpJDxdM0FTzyWOmmt+sychWW4qvfrDLU6QijohNk7yRe5yKPmYNNks0siYqtCi2FAz1dHbhv+AMwWcTnVABQTUsing “real world” language of science, this question reinforces the importance of the different bonds that stabilize the four levels of protein structure.
Q: The three dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The sentences below are from scientific articles on protein structure. For each of the sentences, indicate the level of protein structure (primary, secondary, tertiary, or quaternary) that applies best.
(Correct answers are indicated in parentheses)
The three-dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The following are sentences taken from scientific articles on protein structure. For each of the statements, choose the level of protein structure that applies best.
tDh8glhhJPmjGZZfA7O8+SxDmyDP9jB/WuYMWuYBXZKOQ+/KgLW2Mqms0HvJztuUyrTamGBQRzeNWYTOwHRLTa7/aK6JEChxQzgYfsdJiYw5p1aOVoplmvL7ioBJZdlytcSx8tAPYUuKYbthgAmJHD09xS5Yba+gH28yencrkqlOKbpLC+QkB4XN+7JPa7FGsRgnWJ/Qu4V+gXHhrsWsIPon61nJ3hESJROEOND4WvBKEDtnS6QgwLtM/UYxvjsfX6V6Aw==Using “real world” language of science, this question reinforces the importance of the different bonds that stabilize the four levels of protein structure.
The three dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The sentences below are from scientific articles on protein structure. For each of the sentences, indicate the level of protein structure (primary, secondary, tertiary, or quaternary) that applies best.
(Correct answers are indicated in parentheses)
The three-dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The following are sentences taken from scientific articles on protein structure. For each of the statements, choose the level of protein structure that applies best.
ybP6XvJmhAjX+MPHqvyy3UsoEMKiWnmONpV4Ylsm6z+0owzxkwUh9Zw4RcF9DDXTDQqBVj8YszQlx8wsDaF2ODdt/mB+Lvh9Sl8BcDCGUwLB9KSRXvtk6eqJH6sG6daNHMQJgLTrIVvQP5s3K/xSrJBrT3jAW23t2jdBNCLIRmtkjriMYZhnr6lSZ76Ispihq+SubFzIqlot7shG5MS8rBg6s/lTrbbOjtVrphb4/18/+mFyY3+9t9pfsk4DHylNFv3IlXbZB3E+dorowoDkaA==Using “real world” language of science, this question reinforces the importance of the different bonds that stabilize the four levels of protein structure.
Q: The three dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The sentences below are from scientific articles on protein structure. For each of the sentences, indicate the level of protein structure (primary, secondary, tertiary, or quaternary) that applies best.
(Correct answers are indicated in parentheses)
The three-dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The following are sentences taken from scientific articles on protein structure. For each of the statements, choose the level of protein structure that applies best.
8l/yD7tl6rn2mp16fK+vIQakAEMa440HACx33h19vAj+Jwb7/q/z1OBfzLSVWrV68kHH48JWkVl3WUQJu3G0XcdyknJOvaLs4fEHRXePp9mXpFWOfj6cbMPrLKASnaTpY28rXR9OmRuC1ijvpVjcxfiggzN3JZF4J03rGXeFxNhBoSI/tjRyVCM+MpRNmdd2XxC5MzxJ2tIFusuH8gKtIftgRFFUa+mIK1lrSS8e6LbQIFyFndKdqcaFwcNU2GlIN0sjSw==Using “real world” language of science, this question reinforces the importance of the different bonds that stabilize the four levels of protein structure.
Q: The three dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The sentences below are from scientific articles on protein structure. For each of the sentences, indicate the level of protein structure (primary, secondary, tertiary, or quaternary) that applies best.
(Correct answers are indicated in parentheses)
The three-dimensional shape of a protein is determined by the primary, secondary, tertiary, and in many cases, the quaternary structure of the protein. The following are sentences taken from scientific articles on protein structure. For each of the statements, choose the level of protein structure that applies best.
VsKF6KrNVTbWCe+lM5zxIPE6uUqq+f/glx9Bv4QbrltVgqK2FO83UAyDgl+/9gip9tdL25gMF/LPgLlT1Xxm3pFSu9reIoY0GPVWhYpc9ST2cJhBCsmPcVGCJeHYyEzzfvxEysZcvt5JLU36DjUV8s+AyWXRWV64This question reinforces the importance of the peptide bonds that stabilize the primary structure of proteins.
Q: The function of a protein is dependent upon the shape into which the chain of amino acids folds. Many non-covalent interactions are responsible for maintaining the protein’s shape. Assume you have isolated a protein from an organism in its proper shape, and you have treated it with an enzyme that selectively breaks only the peptide bonds in the proteins. Would the protein retain its shape under these conditions?
A: The shape, or conformation, of the protein would be destroyed because most of the amino acids would exist as free monomers. The peptide bonds responsible for maintaining the primary structure of a protein are absolutely essential to the correct structure, and therefore the function, of any protein.
This question provides a good review of pH (the concentration of positively charged hydrogen ions), temperature (the average energy of motion) and its effect on hydrogen bonds, and hydrophobic effect.
Q: The interactions between amino acids are major factors in determining the shape of a protein. These interactions can be affected by the environment surrounding a protein. Explain how the temperature, pH, ion concentration, and hydrophilic or hydrophobic properties of the environment may impact the shape of a protein, and therefore its function.
A1: Temperature is an important environmental factor because of its effect on hydrogen bonds. Hydrogen bonds stabilize secondary structure and are often important in stabilizing tertiary and quaternary structure. At abnormally high temperatures, H bonds become destabilized, leading to changes in protein shape.
A2: Increases or decreases in pH (the concentration of hydrogen ions) affect protein shape by interfering with normal electrostatic (ionic) interactions between charged or polar side chains. An increase in pH may cause deprotonation (and loss of partial charge) of a basic side chain. A decrease in pH (or an increase in hydrogen ion concentration) disrupts ion interactions between charged side chains due to the increased number of positive ions in the environment.
A3: A change in ionic concentration (e.g., in sodium, or chloride ions) has a similar effect on the side chain interaction stabilized by electrostatic interactions or ionic bonds.
A4: A hydrophilic environment will force nonpolar side chains to the interior of a protein. If the environment becomes more hydrophobic, the potential exists for the hydrophobic interactions between nonpolar sides chains to be disrupted, thereby altering the conformation of the protein.
(NOTE: These “answers” to the free response question are written at a level much higher than would be expected from most first-year biology students. It will be up to the instructor to judge student understanding of this concept based on the instruction provided and the answers given by the students.)
Learning Progression 4.2
Students should be able to answer the questions in this activity if they've mastered the following Core Concepts:
By navigating the genetic “dictionary” in Table 4.1, students will become familiar with the variation in the number of codons possible for individual amino acids.
Q: Which of the amino acid(s) are encoded by just one codon? Which amino acids are encoded by the greatest number of codons?
A: Methionine and tryptophan are each specified by only one codon. On the other hand, leucine, arginine, and serine are all encoded by six different codons.
Some amino acids are coded by just one codon. Which of the following amino acids fall into this category? (More than one answer may be correct.)
nbIRnRe8R9/OaJB+ methionine
3hMJDRP6OS+3EJIb tyrosine
wg8JNehuALfILP6S tryptophan
xdqz80TY1Vwhogjf serine
xdqz80TY1Vwhogjf leucine
By navigating the genetic “dictionary” in Table 4.1, students will become familiar with the variation in the number of codons possible for individual amino acids.
Q: Which of the amino acid(s) are encoded by just one codon? Which amino acids are encoded by the greatest number of codons?
A: Methionine and tryptophan are each specified by only one codon. On the other hand, leucine, arginine, and serine are all encoded by six different codons.
Some amino acids are coded by as many as six different codons. Which of the following amino acids fall into this category? (More than one answer may be correct.)
3hMJDRP6OS+3EJIb methionine
3hMJDRP6OS+3EJIb tyrosine
3hMJDRP6OS+3EJIb tryptophan
nbIRnRe8R9/OaJB+ serine
nbIRnRe8R9/OaJB+ leucine
Use this question to familiarize students with the genetic code and to illustrate that multiple codons that specify the same amino acid usually (but not always) vary at the third position.
Q: Explain how 64 possible combinations of A, C, G, and U encode just 20 acids and three stop codons.
A: Sixty-one of the 64 possible codons specify the 20 amino acids found in proteins. Two amino acids are specified by just one codon, nine amino acids are specified by two codons, one amino acid is specified by three codons, five amino acids are specified by four codons, and three amino acids are specified by six different codons. The remaining three codons are stop codons.
The codons in mRNA specify the amino acids that are used to make a protein. Mark the following statement concerning translation TRUE or FALSE.
N/44xIPYpnTteTaJjWeX1yk304Yl/AWW/15ouCOOotENT3XpTJLTZikfbXGiFLYS3YvrwzxaOjtkFEah8oKxLVZ5+3Bo4+rpbu41APQg8CKNidOrX4HFZGqI8ejWNPWia/UCWKb8QnYvdyQBsuRgqyxysOn5GFsUegsmmWPgn5Tns2JF2dMHvQwMbGVAKpM5HZ3MA6SlyBHYCHX6NsquSoUyVv1wjUth6an8l+OKk53Qv7s7yVTrb13eiHVZmANWZDvWtg==Use this question to familiarize students with the genetic code and to illustrate that multiple codons that specify the same amino acid usually (but not always) vary at the third position.
Q: Explain how 64 possible combinations of A, C, G, and U encode just 20 acids and three stop codons.
A: Sixty-one of the 64 possible codons specify the 20 amino acids found in proteins. Two amino acids are specified by just one codon, nine amino acids are specified by two codons, one amino acid is specified by three codons, five amino acids are specified by four codons, and three amino acids are specified by six different codons. The remaining three codons are stop codons.
The codons in mRNA specify the amino acids that are used to make a protein. Mark the following statement concerning translation TRUE or FALSE.
5tUbO+DwDsOUSIDOAHVbirRS6cs80sW37rZ6j4JlVk6rmGgJeMc9YWcu0+4v73wop02aj0DTSV35Vv46Ab2+dgcHN1zmjH9f+p3I0rkhLLLDwW8/mLAiZGukvrFmWQW4fEh0dmYejEnoqwM5uHyyyYACPq5RWth7OjYqeWmY5x9Z9uS5y5792E4672JlETZsUse this question to familiarize students with the genetic code and to illustrate that multiple codons that specify the same amino acid usually (but not always) vary at the third position.
Q: Explain how 64 possible combinations of A, C, G, and U encode just 20 acids and three stop codons.
A: Sixty-one of the 64 possible codons specify the 20 amino acids found in proteins. Two amino acids are specified by just one codon, nine amino acids are specified by two codons, one amino acid is specified by three codons, five amino acids are specified by four codons, and three amino acids are specified by six different codons. The remaining three codons are stop codons.
The codons in mRNA specify the amino acids that are used to make a protein. Mark the following statement concerning translation TRUE or FALSE.
sh297nsqGvqi0heod8hbWqIPa88v484Z/Ufzh6vCCMBdZRAuXTtVv6jWO7cudfi465A2E272kig7x6NzeAFiq3hb8gBWPHYTzzTWUZMYcJhrBXXWIMZZy6vnxCVJ5++yhxKOLUtYbSHmlrU9Jqy+GJXayKtJ2avybZ3iJAgh0S9oKiwcC7R4eAlzNxsYMVvKu0YRSEL4avpYGbzO9SYoBg==Use this question to familiarize students with the genetic code and to illustrate that multiple codons that specify the same amino acid usually (but not always) vary at the third position.
Q: Explain how 64 possible combinations of A, C, G, and U encode just 20 acids and three stop codons.
A: Sixty-one of the 64 possible codons specify the 20 amino acids found in proteins. Two amino acids are specified by just one codon, nine amino acids are specified by two codons, one amino acid is specified by three codons, five amino acids are specified by four codons, and three amino acids are specified by six different codons. The remaining three codons are stop codons.
The codons in mRNA specify the amino acids that are used to make a protein. Mark the following statement concerning translation TRUE or FALSE.
5OBxn7xTDCgbywkL5QsDOWfkC5VOApwKhb9oOyfI62RFfwKLjlyavNq5jmx5151v6b1sJcUJCZDs+0RB/EKzSXGYx7cTfBc0Z5ZSpj2mdFcMv8DYRp0sllZcyO55bOoowm4Q3UQqQOOKmP4DqCnPU+33Eq0mcDbWrOT4z/8AiDpaG2ywX2M3jxAHfNvpA/shLEc1UziGp07BwvtBwnN9w/uYGj3aFDPGslkOT8EE1yPVAiep79+XcxgnPttDUfKboYZiiYifoqJD347Yxnw6QW/IVhxDS9KmjnACbrkrU3YSHvaRzHF9wSzYrHSUAEVBsdFAXnSsWyNimf52KuB+TyM0DWE=This question will not be an easy one for most students, but will be very instructive. It incorporates basic numeracy skills with questions intended to foster conceptual understanding of the genetic code.
Q: Explain how the genetic code would be different if codons consisted of two nucleotides instead of three, but there were still 20 amino acids to be incorporated into proteins during translation?
A: Since there would only be 16 codons (42, or four RNA nucleotides arranged in 16 different pairs), there wouldn’t be enough codons to maintain the fidelity of the genetic code and provide stop codons. That is, if there were only 16 codons, then some would have to code for more than one amino acid, resulting in an ambiguous coded instead of one with high fidelity.
Redundancy would be eliminated, In fact, there would not be enough two-base codons to specify all 20 amino acids or act as stop codons.
Most codons would probably specify a single amino acid, but some codons would have to specify more than one amino acid or an amino acid and a stop codon―not a good situation.
Suppose that codons consisted of two nucleotides instead of three, but there were still 20 amino acids to be incorporated into proteins during translation. If this were the case, indicate whether the following statement would be TRUE or FALSE.
RTBBJ74Ptj0XzQVScUa163YynPfa7jTgvGVsBqsKiMO1EbMKOkbTLYe6lZRpBeCOV4nLIs7lOxnCE1EK9ZDZ4diySNfb94E+fRpZBKNRhPxoq/6/sP+kj+tkuy7UvAwi8/m/yMXZwDq3bRHbpQ02YFk3SbruMAuouOfnY1u96CRdRYT9BaeaWl7Ji3R0Sw1mRuf0HXnCJog=This question will not be an easy one for most students, but will be very instructive. It incorporates basic numeracy skills with questions intended to foster conceptual understanding of the genetic code.
Q: Explain how the genetic code would be different if codons consisted of two nucleotides instead of three, but there were still 20 amino acids to be incorporated into proteins during translation?
A: Since there would only be 16 codons (42, or four RNA nucleotides arranged in 16 different pairs), there wouldn’t be enough codons to maintain the fidelity of the genetic code and provide stop codons. That is, if there were only 16 codons, then some would have to code for more than one amino acid, resulting in an ambiguous coded instead of one with high fidelity.
Redundancy would be eliminated, In fact, there would not be enough two-base codons to specify all 20 amino acids or act as stop codons.
Most codons would probably specify a single amino acid, but some codons would have to specify more than one amino acid or an amino acid and a stop codon―not a good situation.
Suppose that codons consisted of two nucleotides instead of three, but there were still 20 amino acids to be incorporated into proteins during translation. If this were the case, indicate whether the following statement would be TRUE or FALSE.
lKizm+qRYba2NIhhO5gOSUxxXKFc+AidMtjHGbE/o48VBCA99NA5vpTkfP35/J4XJrcyMaunZ96XSSswluGOhOlfli3yCc8upCSpQD9D0kWDtySgo4cr09GbQrbNpvqPuPzDwXVGvy+tFmRVHqrD3d/rUmmy2uiwR1pado9aUpWDkTlsKwi+oMFdBc6cQpqbl1LzDUbCBOq6Pczcg+rYOystHhkhA+bJY2rlp4HhaLT73cCxThis question will not be an easy one for most students, but will be very instructive. It incorporates basic numeracy skills with questions intended to foster conceptual understanding of the genetic code.
Q: Explain how the genetic code would be different if codons consisted of two nucleotides instead of three, but there were still 20 amino acids to be incorporated into proteins during translation?
A: Since there would only be 16 codons (42, or four RNA nucleotides arranged in 16 different pairs), there wouldn’t be enough codons to maintain the fidelity of the genetic code and provide stop codons. That is, if there were only 16 codons, then some would have to code for more than one amino acid, resulting in an ambiguous coded instead of one with high fidelity.
Redundancy would be eliminated, In fact, there would not be enough two-base codons to specify all 20 amino acids or act as stop codons.
Most codons would probably specify a single amino acid, but some codons would have to specify more than one amino acid or an amino acid and a stop codon―not a good situation.
Suppose that codons consisted of two nucleotides instead of three, but there were still 20 amino acids to be incorporated into proteins during translation. If this were the case, indicate whether the following statement would be TRUE or FALSE.
wN3EVfK/7XR4TgOCVhWMa21TvcSv55MA90lVjDr5fZvCkfS3zC20OcCvPfQyOP0zuFKERjrMkdwjXuFRkpsc1qpt5GECen6wH1kP8NnHFc5Mp9+eFTwlLtAkVleSQA/WVxgjNXXhqnhZXYIc8P7qE3T4nN4o/oa1AD7uqlObTixrSHN77g5g/MAN5AULXkHOlrJNU0m8XARYaKhluHHXCJsEAkjFQk9uwVdE5ieltNaC8SMVKpillE2S3RWt5jacBnMzsTszHh9OQLzLUse this to provide practice (or test) identification of the template strand and the use of the genetic code in Table 4.1. Also use to reinforce concept of directionality of template strand (read 3’ to 5’ by the RNA polymerase) and the directionality of polypeptide synthesis (N-term first) by the ribosome.
Q: The first pair of nucleotides (circled) in the double-stranded DNA molecule above is the start point. Label the template and non-template strands of the DNA molecule. Write the corresponding mRNA molecule. Label the 5’ and 3’ ends of the transcript. Underline the start codon. Using the three-letter abbreviations for the amino acids in the table above, “assemble” (write out) the correct polypeptide encoded by the mRNA. Label the amino and carboxyl ends of the polypeptide.
A:
non-template strand → 5’-ATGATCGGATCGATCCAT-3'
template strand → 3’-TACTAGCCTAGCTAGGTA-5’
RNA → 5’-AUGAUCGGAUCGAUCCAU-3’
Polypeptide → amino end- Met-Ile-Gly-Ser-Ile-His –carboxyl end
Use the double-stranded DNA molecule below to answer the following questions. The first pair of nucleotides (circled) is the start point of transcription.
Use this to provide practice (or test) identification of the template strand and the use of the genetic code in Table 4.1. Also use to reinforce concept of directionality of template strand (read 3’ to 5’ by the RNA polymerase) and the directionality of polypeptide synthesis (N-term first) by the ribosome.
Q: The first pair of nucleotides (circled) in the double-stranded DNA molecule above is the start point. Label the template and non-template strands of the DNA molecule. Write the corresponding mRNA molecule. Label the 5’ and 3’ ends of the transcript. Underline the start codon. Using the three-letter abbreviations for the amino acids in the table above, “assemble” (write out) the correct polypeptide encoded by the mRNA. Label the amino and carboxyl ends of the polypeptide.
A:
non-template strand → 5’-ATGATCGGATCGATCCAT-3'
template strand → 3’-TACTAGCCTAGCTAGGTA-5’
RNA → 5’-AUGAUCGGAUCGAUCCAU-3’
Polypeptide → amino end- Met-Ile-Gly-Ser-Ile-His –carboxyl end
Use the double-stranded DNA molecule below to answer the following questions. The first pair of nucleotides (circled) is the start point of transcription.
Provides practice transcribing and translating a sequence of DNA
Engages students with the genetic code
Allows students to discover how a small, single nucleotide substitution (mutation) can have a major effect on a gene product, or potentially no effect at all
Reinforces the concept of amino acid side chains as the parts of the molecule that give the amino acids their distinct chemical characteristics
As a follow-up to this set of questions, ask students to come up with their own single nucleotide mutations that would result in no change in amino acids, a conservative change, or a nonconservative change in the amino acid sequence.
Q: A mutation is defined as a change in the sequence of a DNA molecule. Sometimes mutations cause no obvious changes, but at other times mutations can have profound effects on the synthesis or the function of a protein.
The nucleotide sequences of the DNA molecules in the figure above are the same except for a single point mutation highlighted in yellow. Transcribe and translate each of the sequences then answer the questions below. (In each instance, the circled base pair is the start point of transcription.)
1. Which of the mutations would be least likely to cause a change in the function of the protein?
2. Which of the mutations would cause the synthesis of an incomplete (shorter than normal) version of the protein?
3. Which of the mutations would result in the replacement of an amino acid with a nonpolar side chain with a different, but similar, amino acid?
A:
1. mutation III: SER → THR; POLAR → POLAR (CONSERVATIVE SUBSTITUTION)
2. mutation II: SER → STOP (TRUNCATION MUTATION)
3. None of them because the mutation affects the specification of a polar serine residue in the wild-type sequence.
A mutation is defined as a change in the sequence of a DNA molecule. Sometimes mutations cause no obvious changes, but at other times mutations can have profound effects on the synthesis or the function of a protein.
The nucleotide sequences of the DNA molecules in the figure below are the same except for a single point mutation highlighted in yellow. Transcribe and translate each of the sequences then answer the questions below. (In each instance, the circled base pair is the start point of transcription.)
Provides practice transcribing and translating a sequence of DNA
Engages students with the genetic code
Allows students to discover how a small, single nucleotide substitution (mutation) can have a major effect on a gene product, or potentially no effect at all
Reinforces the concept of amino acid side chains as the parts of the molecule that give the amino acids their distinct chemical characteristics
As a follow-up to this set of questions, ask students to come up with their own single nucleotide mutations that would result in no change in amino acids, a conservative change, or a nonconservative change in the amino acid sequence.
Q: A mutation is defined as a change in the sequence of a DNA molecule. Sometimes mutations cause no obvious changes, but at other times mutations can have profound effects on the synthesis or the function of a protein.
The nucleotide sequences of the DNA molecules in the figure above are the same except for a single point mutation highlighted in yellow. Transcribe and translate each of the sequences then answer the questions below. (In each instance, the circled base pair is the start point of transcription.)
1. Which of the mutations would be least likely to cause a change in the function of the protein?
2. Which of the mutations would cause the synthesis of an incomplete (shorter than normal) version of the protein?
3. Which of the mutations would result in the replacement of an amino acid with a nonpolar side chain with a different, but similar, amino acid?
A:
1. mutation III: SER → THR; POLAR → POLAR (CONSERVATIVE SUBSTITUTION)
2. mutation II: SER → STOP (TRUNCATION MUTATION)
3. None of them because the mutation affects the specification of a polar serine residue in the wild-type sequence.
A mutation is defined as a change in the sequence of a DNA molecule. Sometimes mutations cause no obvious changes, but at other times mutations can have profound effects on the synthesis or the function of a protein.
The nucleotide sequences of the DNA molecules in the figure below are the same except for a single point mutation highlighted in yellow. Transcribe and translate each of the sequences then answer the questions below. (In each instance, the circled base pair is the start point of transcription.)
Provides practice transcribing and translating a sequence of DNA
Engages students with the genetic code
Allows students to discover how a small, single nucleotide substitution (mutation) can have a major effect on a gene product, or potentially no effect at all
Reinforces the concept of amino acid side chains as the parts of the molecule that give the amino acids their distinct chemical characteristics
As a follow-up to this set of questions, ask students to come up with their own single nucleotide mutations that would result in no change in amino acids, a conservative change, or a nonconservative change in the amino acid sequence.
Q: A mutation is defined as a change in the sequence of a DNA molecule. Sometimes mutations cause no obvious changes, but at other times mutations can have profound effects on the synthesis or the function of a protein.
The nucleotide sequences of the DNA molecules in the figure above are the same except for a single point mutation highlighted in yellow. Transcribe and translate each of the sequences then answer the questions below. (In each instance, the circled base pair is the start point of transcription.)
1. Which of the mutations would be least likely to cause a change in the function of the protein?
2. Which of the mutations would cause the synthesis of an incomplete (shorter than normal) version of the protein?
3. Which of the mutations would result in the replacement of an amino acid with a nonpolar side chain with a different, but similar, amino acid?
A:
1. mutation III: SER → THR; POLAR → POLAR (CONSERVATIVE SUBSTITUTION)
2. mutation II: SER → STOP (TRUNCATION MUTATION)
3. None of them because the mutation affects the specification of a polar serine residue in the wild-type sequence.
A mutation is defined as a change in the sequence of a DNA molecule. Sometimes mutations cause no obvious changes, but at other times mutations can have profound effects on the synthesis or the function of a protein.
The nucleotide sequences of the DNA molecules in the figure below are the same except for a single point mutation highlighted in yellow. Transcribe and translate each of the sequences then answer the questions below. (In each instance, the circled base pair is the start point of transcription.)
Basic Knowledge Questions
The covalent bond between adjacent amino acids in a polypeptide chain is referred to as a zEJb9Bfpby9Z960/ bond.
The codon used to initiate protein synthesis is: aNQg6P6IsFE=.
A group of functionally related genes transcribed as a single transcriptional unit under the control of a single promoter is referred to as a(n) dkuACcRcX5ODvREZ.
A region of a protein that folds in a similar way independently of the rest of the protein is referred to as a folding 1tBgPnbxbruwAoDk.
Structurally and functionally related proteins are grouped into approximately 25,000 different protein ia+tPV7JFqvZt4Q+
Pre-Made Assessments
This section will show how we've used the Progression Questions and Basic Knowledge Questions in pre-made assessments in the Launch Pad Unit.
Chapter 4 Pre-Class Assignment
This assignment pulls appropriate questions from the Biology: How Life Works Progressions and Basic Knowledge Questions to provide you with a pre-made assignment meant to be used after students read a chapter and before class. Designed by an author, this assignment considers the goals of the chapter and addresses Core Concepts. Included questions are listed below.
Chapter 4 In-Class Learning Progression Questions
The Progressions allow you to use assessment not only for testing, but for teaching. This assignment was developed by an author and suggests questions from the Progressions that can be used during your class to develop meaningful classroom discussions. Included questions are listed below.
Chapter 4 Homework
This assignment pulls appropriate questions from the Biology: How Life Works Progressions and Basic Knowledge Questions to provide you with a pre-made assignment meant to be used after class as homework. Designed by an author, this assignment considers the goals of the chapter and addresses Core Concepts. Included questions are listed below.
Chapter 4 Exam Questions
Developed by one of our authors, this pre-made exam shows you an example of how you can use the Progressions and Basic Knowledge Questions to develop an exam that will measure student understanding of chapter Core Concepts. Instructors who write their own exams, may wish to use these questions as a quiz or practice test. Included questions are listed below.