Chapter 1. Mirror Experiment Activity for Fig. 13.1: How different are the sequences of the human and chimpanzee genomes?

Experiment

Background

As discussed in Chapter 13, researchers are able to sequence an organism’s genome by digesting or breaking it apart into smaller pieces, sequencing the resulting small genomic fragments, and then aligning these fragments based on sequence overlaps. Although it can be remarkably informative to look at the whole genome sequence of a single organism, researchers can also gain a great deal of information when they compare the whole genome sequences of two different species. They can identify mutations in the genetic sequences that are unique to one species or the other, and can isolate mutations that might be responsible for the different phenotypes observed in these organisms. How different are the sequences of the human and chimpanzee genomes? And if any differences exist between the whole genome sequences of humans and chimpanzees, can these differences help us understand how our species evolved?

Hypothesis

The Chimpanzee Sequencing and Analysis Consortium (CSAC) – a group of over 60 researchers at different institutions – hypothesized that by comparing the whole genome sequences of humans and chimpanzees, mutations that are unique to humans or to chimpanzees could be identified. They could effectively determine how different the chimpanzee and human genomes are from each another.

Experiment

Researchers isolated genetic material from the white blood cells of a chimpanzee. Using an approach similar to that outlined in Fig. 13.1, scientists constructed a preliminary whole genome sequence for this Great Ape. They compared the chimpanzee and human genomes, and counted the number of nucleotides that differed between these two sequences (Figure 1).

Photo credit: Anup Shah/Animals Animals-Earth Scenes

Results

As we discuss in later chapters, various types of mutations can occur in DNA sequences. Some of these mutations are a change in a single nucleotide, and are referred to as point mutations. Other mutations can involve larger chromosomal segments. A portion of a chromosome can be deleted and removed from an organism’s genome. Chromosome segments can also be duplicated, resulting in extra material within the genome. Often, chromosomal mutations can affect thousands of nucleotides at a time.

The CSAC determined that, as a result of the combined action of point mutations and chromosomal insertions and deletions, the human and chimpanzee genomes differ in sequence by approximately 4%. Some of these differences can be attributed to common allelic differences between individuals in the same species. However, 1-2% of these differences are actually lineage specific, meaning that they are not the result of normal variation within species, but true sequence differences that are unique to either the chimpanzee or human. Researchers were also able to identify certain chromosomal regions where mutations are more likely to occur, predict the rate at which certain genes diverged, and isolate a handful of mutations that could contribute to distinct human and chimpanzee phenotypes.

Source

The Chimpanzee Sequencing and Analysis Consortium. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature. 437: 69-87.