Structure of Nucleic Acids
Arnott, S. 2006. Historical article: DNA polymorphism and the early history of the double helix. Trends Biochem. Sci. 31:349–
Berger, J. M., and J. C. Wang. 1996. Recent developments in DNA topoisomerase II structure and mechanism. Curr. Opin. Struc. Biol. 6:84–
Cech, T. R. 2009. Evolution of biological catalysis: ribozyme to RNP enzyme. Cold Spring Harbor Symp. Quant. Biol. 74:11–
Dickerson, R. E. 1992. DNA structure from A to Z. Meth. Enzymol. 211:67–
Kornberg, A., and T. A. Baker. 2005. DNA Replication. University Science, chap. 1.
Lilley, D. M. 2005. Structure, folding and mechanisms of ribozymes. Curr. Opin. Struc. Biol. 15:313–
Vicens, Q., and T. R. Cech. 2005. Atomic level architecture of group I introns revealed. Trends Biochem. Sci. 31:41–
Wang, J. C. 1980. Superhelical DNA. Trends Biochem. Sci. 5:219–
Wigley, D. B. 1995. Structure and mechanism of DNA topoisomerases. Ann. Rev. Biophys. Biomol. Struc. 24:185–
Transcription of Protein-
Brenner, S., F. Jacob, and M. Meselson. 1961. An unstable intermediate carrying information from genes to ribosomes for protein synthesis. Nature 190:576–
Brueckner F., J. Ortiz, and P. Cramer. 2009. A movie of the RNA polymerase nucleotide addition cycle. Curr. Opin. Struc. Biol. 19:294–
Murakami, K. S., and S. A. Darst. 2003. Bacterial RNA polymerases: the whole story. Curr. Opin. Struc. Biol. 13:31–
Okamoto K., Y. Sugino, and M. Nomura. 1962. Synthesis and turnover of phage messenger RNA in E. coli infected with bacteriophage T4 in the presence of chloromycetin. J. Mol. Biol. 5:527–
Steitz, T. A. 2006. Visualizing polynucleotide polymerase machines at work. EMBO J. 25:3458–
The Decoding of mRNA by tRNAs
Alexander, R. W., and P. Schimmel. 2001. Domain-
Hatfield, D. L., and V. N. Gladyshev. 2002. How selenium has altered our understanding of the genetic code. Mol. Cell Biol. 22:3565–
Hoagland, M. B., et al. 1958. A soluble ribonucleic acid intermediate in protein synthesis. J. Biol. Chem. 231:241–
Ibba, M., and D. Soll. 2004. Aminoacyl-
Khorana, G. H., et al. 1966. Polynucleotide synthesis and the genetic code. Cold Spring Harbor Symp. Quant. Biol. 31:39–
Nakanishi, K., and O. Nureki. 2005. Recent progress of structural biology of tRNA processing and modification. Mol. Cells 19:157–
Nirenberg, M., et al. 1966. The RNA code in protein synthesis. Cold Spring Harbor Symp. Quant. Biol. 31:11–
Rich, A., and S.-H. Kim. 1978. The three-
Stepwise Synthesis of Proteins on Ribosomes
Ban N., et al. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289:905–
Belousoff, M. J., et al. 2010. Ancient machinery embedded in the contemporary ribosome. Biochem. Soc. Trans. 38:422–
Frank, J., and R. L. Gonzalez, Jr. 2010. Structure and dynamics of a processive Brownian motor: the translating ribosome. Ann. Rev. Biochem. 79:381–
Jackson, R.J., et al. 2010. The mechanism of eukaryotic translation initiation and principles of its regulation. Nature Rev. Mol. Cell Biol. 11:113–
Korostelev, A., D. N. Ermolenko, and H. F. Noller. 2008. Structural dynamics of the ribosome. Curr. Opin. Chem. Biol. 12:674–
Livingstone, M., et al. 2010. Mechanisms governing the control of mRNA translation. Phys. Biol. 7(2):021001.
Sarnow, P., R. C. Cevallos, and E. Jan. 2005. Takeover of host ribosomes by divergent IRES elements. Biochem. Soc. Trans. 33:1479–
Steitz, T. A. 2008. A structural understanding of the dynamic ribosome machine. Nature Rev. Mol. Cell Biol. 9:242–
Wimberly, B. T., et al. 2000. Structure of the 30S ribosomal subunit. Nature 407:327–
Yusupova, G. and M. Yusupov. 2014. High-
DNA Replication
DePamphilis, M. L., ed. 2006. DNA Replication and Human Disease. Cold Spring Harbor Laboratory Press.
Gai, D., Y. P. Chang, and X. S. Chen. 2010. Origin DNA melting and unwinding in DNA replication. Curr. Opin. Struc. Biol. 20(6):756–
Kornberg, A., and T. A. Baker. 2005. DNA Replication. University Science.
Langston, L. D., C. Indiani, and M. O’Donnell. 2009. Whither the replisome: emerging perspectives on the dynamic nature of the DNA replication machinery. Cell Cycle 8:2686–
Langston, L. D., and M. O’Donnell. 2006. DNA replication: keep moving and don’t mind the gap. Mol. Cells 23:155–
Schoeffler, A. J., and J. M. Berger. 2008. DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Quart. Rev. Biophys. 41:41–
Stillman, B. 2008. DNA polymerases at the replication fork in eukaryotes. Cell 30:259–
DNA Repair and Recombination
Andressoo, J. O., and J. H. Hoeijmakers. 2005. Transcription-
Barnes, D. E., and T. Lindahl. 2004. Repair and genetic consequences of endogenous DNA base damage in mammalian cells. Ann. Rev. Genet. 38:445–
Bell, C. E. 2005. Structure and mechanism of Escherichia coli RecA ATPase. Mol. Microbiol. 58:358–
Friedberg, E. C., et al. 2006. DNA repair: from molecular mechanism to human disease. DNA Repair 5:986–
Haber, J. E. 2000. Partners and pathways repairing a double-
Jiricny, J. 2006. The multifaceted mismatch-
Khuu, P. A., et al. 2006. The stacked-
Lilley, D. M., and R. M. Clegg. 1993. The structure of the four-
Mirchandani, K. D., and A. D. D’Andrea. 2006. The Fanconi anemia/BRCA pathway: a coordinator of cross-
Mitchell, J. R., J. H. Hoeijmakers, and L. J. Niedernhofer. 2003. Divide and conquer: nucleotide excision repair battles cancer and aging. Curr. Opin. Cell Biol.15:232–
Orr-
Shin, D. S., et al. 2004. Structure and function of the double strand break repair machinery. DNA Repair 3:863–
Wood, R. D., M. Mitchell, and T. Lindahl. Human DNA repair genes. Mutat. Res. 577:275–
Yoshida, K., and Y. Miki. 2004. Role of BRCA1 and BRCA2 as regulators of DNA repair, transcription, and cell cycle in response to DNA damage. Cancer Sci. 95:866–
Viruses: Parasites of the Cellular Genetic System
Flint, S. J., et al. 2000. Principles of Virology: Molecular Biology, Pathogenesis, and Control. ASM Press.
Hull, R. 2002. Mathews’ Plant Virology. Academic Press.
Klug, A. 1999. The tobacco mosaic virus particle: structure and assembly. Phil. Trans. R. Soc. Lond. B Biol. Sci. 354:531–
Knipe, D. M., and P. M. Howley, eds. 2001. Fields Virology. Lippincott Williams & Wilkins.
Kornberg, A., and T. A. Baker. 1992. DNA Replication, 2d ed. W. H. Freeman and Company. Good summary of bacteriophage molecular biology.