Biology is the study of life. One important aspect of biology is the understanding of organisms through dissection. This appendix includes procedures and pictures to aide you with dissections in lab.
1. Earthworm Dissection
Annelids are unique in that their bodies are segmented, a characteristic called metamerism. This feature evolved independently in annelids to facilitate burrowing. Earthworms move in a wavelike motion via peristalsis, due to contraction and relaxation of muscles in their body wall. They have circular and longitudinal muscles that facilitate crawling, burrowing and anchoring. In some annelids metamerism has evolved to facilitate undulatory swimming.
To casual observers, the earthworm is a simple ribbed tube pointed at both ends, with little obvious anatomical complexity, yet earthworms are quite complex animals! They are bilaterally symmetrical, triploblastic organisms with organ systems in a true coelomate body plan. Furthermore, the adaptations that enable them to live and reproduce on land contrast with many of their closest relatives, which include other marine, freshwater and parasitic annelids, as well as mollusks!
Procedure
Once the worm is pinned open, add enough water to the tray to cover the body, thereby floating the organs, making them easier to see and preventing the worm from drying out.
2. Observing Preserved Tissue Slides
Get a microscope and the slides listed below. Sketch each cell or tissue type. Record magnification and label important features on each diagram. All of these slides are stained. The most common histological stain is Hematoxylin and Eosin (H&E) in which hematoxylin stains basophilic structures blue (such as nuclei) and eosin stains acidophilic structures red (such as cytoplasm and some proteins). Refer to Figures D.4–D.10 as a guide.
Materials
3. Rodent Dissection
In Lab 6, you will investigate major organ systems of the rat as a representative of mammals. Almost all of the structures that you will see during this lab are also found in humans. By studying the anatomy of each system separately, you will learn how it contributes to the physiological function of the entire mammalian machine.
Resources
Materials
NOTE: Text terms in bold are to be identified in either the rat, on slides under the light microscope, on photographs, or on micrographs. Questions that are italicized should be answered in your lab notebook.
Rodent Dissection Procedure
Get two dissection pans and two rats per group, preferably one male and one female. Make sure you know how to identify sexes in the rat from the external anatomy.
Throat Region
Clear away the connective tissue in the throat region to see the thymus and the thyroid glands. The thymus gland is large in young animals and can be found both in this region and also in the thoracic cavity, surrounding the heart. You may remove this material, but note the characteristically “grainy” texture that helps identify it as gland rather than connective tissue.
The thyroid is the small, dark, symmetrical organ in the mid-line of the rat’s neck. Directly dorsal to the thyroid is the trachea. Without removing the thyroid, note the ringed cartilage that prevents collapse of the trachea during inspiration (it resembles the hose of a vacuum cleaner). Trace the trachea anteriorly to the larynx. Gently push the thyroid and the trachea to one side and locate the esophagus, which is dorsal to the trachea. What differences do you see between the esophagus and the trachea? How does this relate to function?
The large vessels near the surface of the neck are the jugular veins. Dorsal, and slightly medial to these veins, and lateral to the trachea, are the internal and external carotid arteries. Immediately adjacent to the carotid arteries is the vagus nerve. Note that the jugular veins, carotid arteries and vagi are all bilateral structures.Examine the “artery and vein cross section” slide. Then, cut a small piece of both the carotid artery and jugular vein from your rat. Compare the structures.
Thoracic (Figure D.11) Cavity
Tissues throughout the body metabolize glucose and oxygen (O2) and produce carbon dioxide (CO2) as waste. Large, multicellular organisms require a cardiovascular system which delivers O2 and glucose to the tissues via arteries and removes CO2 via veins. This is why highly metabolic tissues, such as muscle and nervous tissue are highly vacularized.
Cardiovascular System
The mammalian cardiovascular system consists of the heart (Figure D.12) and two circuits of blood vessels: 1) the pulmonary circuit includes the blood vessels that carry blood to and from the lungs and 2) the systemic circuit includes the blood vessels that carry blood to and from the rest of the body. Find the heart in the thorax. From the outside it appears to have two parts: a top part with blood vessels and a bottom triangular part. The dark flaps on the top, and on either side of the pulmonary artery and aorta, are the left and right atria; the bottom part contains the left and right ventricles.
NOTE: Whenever we describe a left and right, we are referring to the rat’s left and right. If your rat is on its back (as it should be), then the left atrium and left ventricle will be on the right side of the heart, etc.
Examine the model of the heart and trace the flow of blood from the vena cava through the right side of the heart to the pulmonary artery. Then trace the blood from the pulmonary vein to the left side of the heart to the aorta. Note the valves that prevent the backflow of blood in the heart.
Dorsal to the heart, find the vena cava that carries oxygen poor blood from the tissues to the right atrium. Then blood goes to the right ventricle, the pulmonary artery, and the lungs where it is oxygenated.
Locate the aorta that curves rostrally, dorsally, and then caudally toward the abdomen. Follow the aorta down into the abdomen, noting the arteries that branch off from it to the major abdominal organs, including the celiac, mesenteric, and renal arteries. Nestled between the aorta and the vena cava on the dorsal side of the heart (the side closest to the spine) are the branch points from the pulmonary artery and vein. The large dark purple structure on the dorsal side of the heart is the merger of the cranial and caudal vena cava. The pulmonary artery and vein are dorsal to this structure.
Pulmonary System
As you were dissecting the throat region (Figure D.11), you identified the trachea (commonly called the windpipe). Open the rat’s mouth and try to locate the opening to the trachea. It is probably blocked by a small flap of skin called the epiglottis. Based on the anatomical position of the epiglottis, what is its function?
Surrounding the heart on either side are lobes of the lungs. Locate the muscular “wall” that divides the thorax from the abdomen. This is the diaphragm, which is skeletal muscle. A rat breathes much like you do. During inspiration, or breathing in, the diaphragm contracts; this increases the internal volume of the thorax and pushes the chest wall outward. This increase of volume results in a decrease of pressure (compared to the outside of the body). Air passively moves from higher pressure (outside of the body) to lower pressure (inside of the lungs) and a gas pressure equilibrium is reached UNTIL the diaphragm relaxes. Then the chest wall recoils into its original resting position (before you took a breath) and now the pressure on the inside of the lungs is greater than the outside the body. So air moves passively from higher pressure (inside of the lungs) to lower pressure (outside of body) and equilibrium occurs...until you want to breathe again!
Examine the slide of lung tissue. The many open spaces are the alveoli where gas exchange occurs. Locate the small capillaries and blood vessels in the lung tissue. Also, in most slides of the lung, you will be able to locate a bronchiole, which is the last branch of the lung airway before the alveoli. A bronchiole is surrounded by smooth muscle but does not have cartilage.
Gastrointestinal (GI) Tract
Unlike plants which are autotrophic, animals must ingest food in order to survive. After ingestion, the GI tract must digest macromolecules, absorb nutrients, and egest (eliminate unused food). The GI tract is a long assembly line of processes that normally involve the secretion of special enzymes by glands such as the salivary glands, stomach, pancreas, etc. In this portion of the laboratory, you will examine the structure of the digestive system and learn its anatomy.
The GI tract is a tube that begins in the mouth and ends at the anus. The inside of the GI tract is, in effect, the outside of the body. So, all materials absorbed from food and liquids must pass through the wall of the tract to enter the body. Food in the mammalian tract is digested mechanically and chemically. Chewing by the teeth in the mouth is purely mechanical and breaks the food into smaller particles, which increase the surface area on which digestive enzymes can act. Masticated food forms a bolus that the tongue helps you swallow. As the bolus passes through the pharynx, the epiglottis folds over the trachea so that the bolus can pass into the esophagus. The food moves caudally within the esophagus into the stomach. Notice that the esophagus passes through the diaphragm and thus is an organ that is found in both the thoracic and abdominal cavities.
Now that we have reached the abdominal cavity (Figure D.13), it may be necessary to remove part of the large dark purple structure that is taking up most of the space in the rostral abdomen, the liver. The liver must be lifted out of the way so that you can see the stomach. As you do this, notice another dark purple organ in this region on the left side of the stomach, the spleen.
The stomach has a muscular wall and contraction of this wall mixes the food and enzymes. Epithelial cells in the stomach secrete hydrochloric acid (HCl), which lowers the pH (acid) of the stomach contents. HCl also stimulates the release of pepsinogen, a zymogen (an inactive proenzyme) that is converted to the active enzyme, pepsin. Pepsin is a protease that digests protein. The stomach then empties into the first section of the small intestine, called the duodenum.
Accessory glands of the duodenum release digestive fluids and enzymes which mix with the food. The liver produces bile salts, which are stored in the gall bladder. The cystic duct carries the bile to the common duct where it joins with pancreatic enzymes and ultimately is excreted into the duodenum where it mixes with food. Sometimes, bile salts precipitate and form stone-like objects called gallstones which cause painful irritations and affect one’s ability to digest fats. Locate the pancreas in the bend of the duodenum caudal to the stomach. The pancreas is an exocrine gland that releases digestive enzymes into the GI tract (“outside of the body”). The pancreas is also an endocrine gland which releases hormones such as insulin and glucagon into the cardiovascular system.
The small intestine is long (if you have time at the end of lab, pull it out and try to measure its length). This is where the majority of nutrient and water absorption takes place. Look at a slide of the small intestine under the microscope. Note that the lining has many folds. This folding increases the surface area for greater food absorption. Also notice that the intestines are surrounded by mesentery, a clear sheet of tissue that attaches them to the dorsal wall of the abdomen. Mesentery is a two layered membrane of mesothelium and connective tissue that support the blood vessels, lymphatic vessels, and nervous tissue of the intestines.
Find the junction where the small intestine empties into the colon. (The colon is much shorter than the small intestine, but is larger in diameter, which is why it is often called the large intestine.) At this junction, the food must make a hairpin curve through a cul-de-sac like structure that is called a caecum. In many herbivores, this sac is large and contains organisms that secrete the enzyme cellulase, which then digests cellulose. In humans, our appendix is the vestigial remnant of this structure. The colon is responsible for the absorption of water left after digestion and food absorption in the stomach and small intestine. It is also used for storage of the waste material. The colon ends at the anus. Note the sphincter that prevents the emptying of the colon except during the process of defecation.
Renal and Reproductive Systems (Figure D.14)
Sometimes called the excretory system, the renal system is responsible for the removal of metabolic waste. The kidneys are the primary organ of this system and they filter the blood to form urine, which contains excess water, ions such as sodium, and waste products like urea. Kidney failure rapidly leads to death. Explain. The renal system also maintains a homeostatic balance of proteins, sugars, and some hormones. Push the intestines to one side so you can see the paired kidneys, and carefully cut away some of the connective tissue so you can trace the ureters which carry urine from the kidneys to the bladder, located ventrally between the umbilical arteries. Urine is stored here, and then released through the urethra to the outside in the female, or through the urethra and penis to the outside in the male.
What is the advantage of having a bladder? Find the renal artery and renal vein. Very carefully dissect away some of this connective tissue to find the adrenal gland attached to the rostromedial surface of the kidney. Use special care, because it is easy to discard the very small pink gland with the connective tissue.
The ovaries in the female are small kidney-shaped organs within the abdominal cavity just caudal to the kidneys. They are closely associated with tubes called the horns of the uterus (the equivalent of the fallopian tubes in humans). These tubes join centrally at the body of the uterus. Follow the uterus down to the vagina (you must cut the ventral pubic bone), where it joins the urethra and exits the body, just ventral to the colon and anus. (Note that in humans, the vagina and the urethra do not join, but have separate openings to the body surface, between the labia.) Make a longitudinal cut through the uterus and vagina.
In males, note the scrotal sacs on the exterior. In order to find the testes, you will have to locate the two ductus deferens: tubes which join just dorsally to the caudal end of the bladder, which you can trace back to the abdominal wall. The inguinal canal is a small “tunnel” in the abdominal wall that was formed by the descent of the testes, through which the spermatic cord, which also carries the spermatic artery and nerve, descend to the scrotum.
Cut through the abdominal wall in this area on one side only, and continue to cut through the skin of the scrotal sacs until you find the testis. Note the gubernaculum, which attaches the testes to the scrotal sac, and the epididymis, which runs along the side of the testis to the ductus deferens. Sperm are formed in the seminiferous tubules within the testis, and then move to the epididymis, where they mature and are stored until ejaculation through the ductus deferens. Follow the ductus deferens back rostrally to the urethra. Just dorsally, where they enter the urethra, are small paired glands, the seminal vesicles. The prostate gland is located between the seminal vesicles, but in the rat it is quite small and it is extremely difficult to find. Now trace the urethra caudally toward the anus. Located on either side are the paired bulbourethral glands (Cowper’s glands, in humans). All these glands secrete the liquid, called seminal fluid, which carries the sperm.
4. Skeletal Systems Comparison
The human (Figure D.15) and the rat (Figure D.16) skeleton are shown in diagrams below.
5. Dissecting a Bony Fish
External Anatomy (Figure D.17)
Internal Anatomy (Figure D.18)
6. Clam Dissection
When most people think of bivalves, they think of dinner! Clams, oysters and mussels are a global delicacy. Snails, squid and octopus are also mollusks and like the bivalves above, some are also highly prized as food. How can such different looking animals belong to the same taxonomic group? Though their shapes are profoundly different they share features that allow us to place them together. The name mollusk means “soft-bodied” but all mollusks are bilaterally symmetrical, have a reduced coelom, have an open circulatory system called the “hemocoel,” they mostly concentrate their organs in a visceral mass, their bodies are covered with a protective tissue called a mantle, their heart has an auricle and ventricle, their mouth often has a radula, and early development in the mollusks is the same. As you do this clam dissection, think about reasons why pearls are formed when sand or other particles get caught between the shell and the mantle. Also, consider the adaptations a bivalve needs if it has to burrow very deeply.
Clam Dissection Procedure