CHAPTER 8 Test Your Knowledge

Driving Question 1

What determines the shape of a protein?

By answering the questions below and studying Infographics 8.1, 8.2, and 8.4, you should be able to generate an answer for the broader Driving Question above.

KNOW IT

A protein is made up of a chain of __________.
a. nucleotides

b. amino acids

c. lipids

d. fatty acids

e. simple sugars

b

What determines a protein’s function?
a. the sequence of amino acids

b. the three-dimensional shape of the folded protein

c. the location of its gene on the chromosome

d. all of the above

e. a and b

e

USE IT

Heating a protein can cause it to denature, or unfold. What do you think would happen to the function of a protein in a denatured state? Explain your answer.

An unfolded protein does not have a three-dimensional shape and so will not be able to function, as three-dimensional shape is critical for protein function.

State two ways by which a person can be deficient in antithrombin activity. (Hint: Think of level of expression, which is driven by the regulatory sequence, and the amino acid sequence of the protein, which is determined by the coding sequence.)

If the regulatory sequence is mutated such that its function is impaired, the gene won’t be expressed properly. If less mRNA is produced, there will be less protein, leading to a deficiency in overall antithrombin activity. If the coding sequence has a mutation that leads to a change in the amino acid sequence, the protein may have a different three-dimensional shape, reducing its activity.

Driving Question 2

What are the steps of gene expression, and where do they occur in a cell?

By answering the questions below and studying Infographics 8.2, 8.5, 8.7, 8.8, 8.9, and 8.10, you should be able to generate an answer for the broader Driving Question above.

KNOW IT

“A gene contains many chromosomes. Each chromosome encodes a protein.” Is this statement accurate? If not, explain why not, and rewrite it to make it correct.

This statement is not accurate. Chromosomes contain genes, and genes encode proteins. A possible rewrite: “A chromosome contains many genes. Each gene encodes one or more proteins.”

What is the final product of gene expression?
a. a DNA molecule

b. an RNA molecule

c. a protein

d. a ribosome

e. an amino acid

c

For each structure or enzyme listed, indicate by N (nucleus) or C (cytoplasm) where it acts in the process of gene expression in a eukaryotic cell.


RNA polymerase (N); ribosome (C); tRNA (C); mRNA (C) (mRNA is made by transcription in the nucleus, but it acts in translation in the cytoplasm)

What is the product of transcription?
a. a gene

b. a protein

c. RNA

d. a chromosome

e. RNA polymerase

c

A gene has the sequence ATCGATTG. What is the sequence of the complementary RNA?
a. ATCGATTG

b. TACGTAAC

c. GTTAGCTA

d. UAGCUAAC

e. CAAUCGAU

d

USE IT

If someone has reduced levels of normal functioning antithrombin, would you suspect a problem in the regulatory or in the coding sequence of the antithrombin gene? Explain your answer.

It is likely that the regulatory region is not working properly. If the regulatory region is not working properly, the normal amount of protein won’t be produced. As long as the coding sequence is normal, what protein is produced will function, but there won’t be enough of it. It is also possible that one copy of the antithrombin gene is altered in either or both of the regulatory or coding regions, and that the other copy is completely normal. In this case, there will be normal protein produced (at lower levels) from a single copy rather than from two copies.

If you wanted to use genetic engineering to increase the amount of antithrombin that someone produces, would you modify the regulatory sequence or the coding sequence? Explain your answer.

In order to increase the amount of antithrombin produced, the regulatory sequence should be altered to increase the level of gene expression. Increasing gene expression by altering the regulatory region will increase the amount of mRNA, which in turn will increase the amount of protein produced.

A change in DNA sequence can affect gene expression and protein function. What would be the impact of each of the following changes? How, specifically, would each change affect protein or mRNA structure, function, and levels?
a. a change that prevents RNA polymerase from binding to a gene’s regulatory sequence

b. a change in the coding sequence that changes the amino acid sequence of the protein

c. a change in the regulatory sequence that allows transcription to occur at much higher levels

d. a combination of the changes in b and c

a: If RNA polymerase cannot bind to the regulatory sequence, the gene will not be expressed. No mRNA will be produced, and therefore no protein. b: A change in the coding sequence that changes the amino acid sequence of the protein can change the shape and function of the protein. There may be normal amounts of protein present, but it may not function. c: A change in the regulatory sequence that increases the amount of gene expression will increase the amount of protein present because of the increased amount of mRNA present. The protein will function normally, but because there is now more of it, the overall activity may increase. d: If the regulatory sequence is changed to increase levels of gene expression, more protein will be produced. But if the coding sequence is altered, the protein expressed will not function properly, resulting in an increase in the amount of nonfunctional protein.

Driving Question 3

How can animals be genetically modified to produce human proteins (with therapeutic uses)?

By answering the questions below and studying Infographics 8.5, 8.6, and 8.7, you should be able to generate an answer for the broader Driving Question above.

KNOW IT

Why is recombinant protein production in milk of transgenic animals an efficient strategy?
a. because milk is secreted, so the protein can be obtained noninvasively

b. because milk is produced in relatively large quantities

c. because mammary glands naturally secrete large quantities of proteins into milk

d. because milk is easier to obtain than other secretions (e.g., urine, sweat, and saliva)

e. all of the above

e

In an antithrombin-producing transgenic goat,
a. is the antithrombin gene construct present in every cell, or only in mammary cells? Explain your answer.

b. is the antithrombin gene construct expressed in every cell, or only in mammary cells? Explain your answer.

a: The construct is present in every cell, as it was introduced into the embryo. b: The construct is expressed only in mammary cells, because its regulatory region is specific for expression in mammary cells.

Explain why scientists used the beta-casein regulatory sequence to express human antithrombin in goats’ milk.

The beta-casein gene (because of its regulatory sequence) is expressed only in mammary cells. Because this regulatory sequence directs expression only in mammary cells, it will direct expression of the protein to be released in milk.

USE IT

Melanin is a pigment expressed in skin cells; melanin gives skin its color. If you wanted to express a different gene in skin cells, which part of the melanin gene would you use? Why? If you wanted to produce melanin in yeast cells, what part of the melanin gene would you use? Why?

In order to express a non–skin cell gene in skin cells, the gene must be controlled by a regulatory sequence from a skin cell gene. In this case, the regulatory sequence of the melanin gene would drive the expression of another gene in skin cells. In order to produce melanin in yeast cells, a yeast gene regulatory region should be connected to the melanin gene. This would cause the melanin gene to be expressed in yeast.

Lysozyme is a protein secreted in tears and saliva in all mammals. Amylase is a protein secreted in mammalian saliva.
a. Describe the recombinant gene that you would assemble to express recombinant human insulin in the tears of goats.

b. Describe the recombinant gene that you would assemble to express recombinant human antithrombin in goat saliva.

c. Is either of these approaches as practical as protein production in milk? Why or why not?

a: In order to express insulin in the tears of goats, the lysozyme gene regulatory sequence would be needed to drive the expression of the insulin gene. b: In order to express recombinant human antithrombin in goat saliva, the amylase gene regulatory region (which drives expression in saliva) would have to be connected to the human antithrombin gene. c: Both approaches will lead to expression of the desired protein in the desired place—in tears or saliva. But neither of these secretions produces as much volume as milk. Expressing the proteins in milk will result in a product that is easily obtained in large quantities.

Driving Question 4

What are some practical applications of genetically modified organisms in treating human disease?

By answering the questions below and studying Infographics 8.3, 8.5, and 8.6, you should be able to generate an answer for the broader Driving Question above.

KNOW IT

181

Goat’s milk is used to produce cheese that humans can eat. How is this application of goat’s milk for human use different from the one described in this chapter?

In the case of goat cheese, the goat’s milk does not include a foreign protein encoded by a transgene. The production of cheese from goat’s milk does not require genetic modification.

Why are biotechnology companies eager to design genetically modified organisms to express therapeutic proteins, particularly ones that would otherwise have to be isolated from blood products (e.g., human antithrombin) or animal organs (e.g., insulin, originally isolated from pig pancreas)? (Hint: Consider cost, safety, and practicality.)

Therapeutic proteins that have to be isolated from blood products or animal organs have several disadvantages. There is a risk of contamination with blood-borne pathogens or zoonotic viruses (those found in other animals that can infect humans)—this is a safety concern. The process often takes a huge volume of blood or organs, requiring many donors or the sacrifice of many animals, and these resources may not always be available in sufficient quantity, affecting the ability of the company to produce sufficient quantity of the drug. Proteins from other animals may not be exactly identical to the human version, so may not be as effective as the human version. Often, the purification process is very elaborate and lengthy, making the purification and the final product very expensive. Thus genetic engineering that establishes transgenic animals that produce large quantities of the human protein in their milk is attractive, because this method circumvents many of these concerns. Of course, some may object to genetically engineering another organism for human purposes, and there are regulations concerning the process that companies must comply with.

USE IT

Type 1 diabetes results from a loss of insulin production from the pancreas. People with diabetes take recombinant human insulin expressed in bacteria.
a. Describe the gene construct necessary for expression of human insulin in bacteria.

b. Describe the gene construct necessary to produce human insulin in goat’s milk.

c. If you were to attempt gene therapy (genetically modifying the human’s genome so that they can produce their own insulin), would you need a recombinant form of the insulin gene? Explain your answer.

a: The gene construct would have to have a bacterial gene regulatory region attached to the human insulin coding region. b: To produce human insulin in goat’s milk, the construct would have to have a regulatory region from a gene expressed in goat’s milk (e.g., beta-casein) attached to the coding region of the human insulin gene. c: A recombinant form of the insulin gene would not be necessary to genetically modify a human to express insulin if the expression were to take place in the pancreas. The insulin gene regulatory region will allow the expression of the insulin gene in the pancreas. If insulin expression were desired in some other tissue, then a regulatory region specific for that tissue (instead of the natural pancreas gene regulatory region) would be required.

INTERPRETING DATA

Hereditary antithrombin deficiency occurs in approximately 1 in 5,000 people in the United States. It takes approximately 2.8 g of antithrombin protein to treat one patient with antithrombin deficiency in need of a surgical procedure.
a. How many people in the United States are affected by this disease?

b. A particular transgenic goat produces 2 g of antithrombin per liter of milk. The same goat produces approximately 800 liters of milk over a 10-month lactation period. How much total protein does this goat produce in 10 months? How many surgical patients can be treated with the recombinant protein produced from one goat?

c. Before recombinant antithrombin was available, patients with antithrombin deficiency were treated with antithrombin purified from the blood of blood donors. Each donation of a pint of blood has approximately 0.07 g of antithrombin. How many donations are needed in order to treat a single surgical patient with antithrombin deficiency?

a: Assuming a U.S. population of 316 million (the population at the time of writing), and that 1 in 5,000 people has antithrombin deficiency, then 63,200 people in the United States would be expected to have antithrombin deficiency b: At 2 g antithrombin per liter, the goat will produce 1600 g (1.6 kg) of antithrombin in 10 months. At 2.8 g per patient, this amount is enough to treat ~570 patients. c: It would take 40 pint donations of blood to purify enough antithrombin to treat one surgical patient.

MINI CASE

A 75-kg pregnant woman with hereditary antithrombin deficiency requires an emergency cesarean section, a surgical procedure. Her current baseline antithrombin levels are 25% of normal (expressed as International Units (IU) per ml of blood).
a. What are the risks to this mother if she undergoes the procedure?

b. Emergency room doctors must immediately treat her with a “loading dose” of recombinant human antithrombin (ATryn). The loading dose is calculated as [(100% IU – baseline antithrombin (% IU))/2.3] body weight in kilograms. What loading dose, expressed in IU, does this patient require?

c. A vial of ATryn contains 1,750 IU. How many vials are needed for this loading dose?

d. The operation is successful, and both the mother and her new baby boy are fine. Why does mom always tell people that her son’s guardian angel is a goat?

a: As a cesarean section is a surgical procedure, the woman is at risk for clots that may develop during the procedure. These clots could lodge in different blood vessels in the body, leading to heart attacks or strokes. b: She needs [(100-25)/2.3] × 75 = 2445.7 IU ATryn. c: The loading dose will require 1.4 vials of ATryn. d: Because the ATryn that she received before the emergency cesarean section was produced by a recombinant goat.

BRING IT HOME

A number of concerns have been expressed about GMOs. Search the internet for reliable sources about a particular GMO that you have heard of or in which you are interested (e.g., Golden Rice or genetically modified salmon). List what you consider to be the pros and cons of at least two GMOs. Has what you have read about other genetically modified organisms and the transgenic goats in this chapter changed your opinions about GMOs? What restrictions (if any) would you place on GMOs?

Answers will vary, depending on the specific GMO. Pros: lower cost, patient safety, food with higher concentrations of key nutrients, and reduced use of chemicals (e.g., pesticides and herbicides). Cons: concerns for safety, risk of escape of the organisms and thus the potential to overtake wild populations, ethical concerns about manipulating other organisms for human purposes, and other unintended consequences