Chapter 1. Chapter 18: Prokaryotic Diversity

1.1 Introduction

Interactive Study Guide
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Polaris Trail

Welcome to the Interactive Study Guide for Chapter 18: Prokaryotic Diversity! This Study Guide will help you master your understanding of the chapter's Driving Questions, using interactive Infographics and activities, as well as targeted assessment questions. Click "Next" to get started, or select a Driving Question from the drop-down menu to the right.

Lost City:

Probing life’s origins at the bottom of the sea

DRIVING QUESTIONS

  • What are the prokaryotic domains of life?
  • What are the features of bacteria and of archaea?
  • What are the challenges faced by organisms living at Lost City, and how do they face them?

1.2 Driving Question 1:

Driving Question 1

What are the prokaryotic domains of life?

Why should you care?

Prokaryotic cells measure less than 1/10 the width of the finest human hair, so small that many of them could fit inside one of your cells. So, why care about something so small that it is difficult to find, even under a light microscope? Prokaryotic cells are the most numerous organisms on Earth by a wide margin; the many prokaryotic cells that live on you and inside you keep you healthy and provide many services to your body. Understanding how prokaryotic cells work is essential to knowing how your body works.

We humans have an innate need to categorize our world; it helps us make sense of it. Scientists who study prokaryotes have used several different techniques and lines of evidence to differentiate prokaryotes from eukaryotes. They have since divided the prokaryotes into Bacteria and Archaea. (The three groups: Eukaryotes, Bacteria, and Archaea, are called the three domains of life.) Understanding that there are two forms of prokaryotic life gives you greater insight into the organisms that drive life on Earth.

What should you know?

To fully answer this Driving Question, you should be able to:

  1. Compare and contrast the structure of prokaryotic and eukaryotic cells.
  2. Describe what conditions prokaryotes are adapted to based on the locations in which they grow and how those conditions influence the energy sources they use.
  3. Explain how the three domains of life—Bacteria, Archaea, and Eukarya—are related to one another.

Infographic Focus:

The infographics most pertinent to the Driving Question are 18.3, 18.4, and 18.5.

Question Test Your Vocabulary

Choose the correct term for each of the following definitions:

Term Definition
aiectF4g7NliPz0JAMhSPKCnJkihrJOu0o+RPDQnceoVqOdd One of the two domains of prokaryotic life; the other is Bacteria.
VNkxJn7ctQfjCZRHlo0fDWh+Z1eZwqNGHbFcTqbH85Ut0CXV A usually unicellular organism whose cell lacks internal membrane-bound organelles and whose DNA is not contained within a nucleus.
V/+Zu6MSRQCztHp8B4d5/WOEWDov1gujvo02oefOjD1Eih/9 One of the two domains of prokaryotic life; the other is Archaea.
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Compare and contrast the structure of prokaryotic and eukaryotic cells.

Question 1.1

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Question 1.2

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Describe what conditions prokaryotes are adapted to based on the locations in which they grow and how those conditions influence the energy sources they use.

Question 1.3

Fill in the following table with the particular conditions prokaryotes have to face in each situation and the energy source(s) they might use in those situations.

Location Conditions Energy Source(s)
Lost City WYCxiN3Q6tJCdU6I WYCxiN3Q6tJCdU6I
Inside intestines WYCxiN3Q6tJCdU6I
none
WYCxiN3Q6tJCdU6I
none
In a salt lake WYCxiN3Q6tJCdU6I
none
WYCxiN3Q6tJCdU6I
none
In a vein of coal under a mountain WYCxiN3Q6tJCdU6I
none
WYCxiN3Q6tJCdU6I
none
Location Conditions Energy Source(s)
Lost City Low oxygen
Aquatic
High pH
High temperature
High pressure
No sunlight
Methane
Inside intestines No to low oxygen
Moist
Sugars
In a salt lake High salt
Aquatic
Low nutrient
Sunlight
In a vein of coal under a mountain Dry
High pressure
Low nutrient
Coal

Question 1.4

CcyWVtYPzRp+3UUNTY+SfsHyEustKGDT+1mXeUpcjIWc1fliULX/7ASxNkgT6IKTmYiQ+gbMNWt/cBA1JUS9DzHeStOze8k9sPXmGI3tNdM=
Prokaryotes have adapted to utilize the energy source that is abundant in their environment.

Explain how the three domains of life—Bacteria, Archaea, and Eukarya—are related to each other.

Question 1.5

Using Infographic 18.5, are bacteria or archaea more closely related to the eukaryotes?

Explain how Carl Woese determined that there were two prokaryotic domains.

Many of the names of archeans and bacteria indicate where they live, what they produce, or what they use for food. For each archean or bacterial name below, related English words or combining forms (suffixes or prefixes) are listed. Look up the definition of those words or combining forms in a dictionary for extra insight about the organism.

Organism Name Related Words or Combining Forms Meanings
Methanococcus Methane gzSKVBDrvH01RmKU
Methanococcus Coccus gzSKVBDrvH01RmKU
Cytophagus Cyto- gzSKVBDrvH01RmKU
Cytophagus -phagous gzSKVBDrvH01RmKU
Theroproteus Thermic gzSKVBDrvH01RmKU
Theroproteus Protean gzSKVBDrvH01RmKU
Table
Organism Name Related Words or Combining Forms Meanings
Methanococcus Methane Methane using
Methanococcus Coccus Berry or round sphere-like shape
Cytophagus Cyto- Cell
Cytophagus -phagous Eater of
Theroproteus Thermic Heat
Theroproteus Protean Sea god who could change his form
Table

Review Questions

Question 1.6

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Question 1.7

LX7OksUQjjDeISYFcRd7JI/h6EzwuzCks/wcsroFslthTQvNf4pAhHLRd5vbXA2wBWrKI+usrud8QVyRapXCK8i4SdUNq3oll2p9/zEInpNyWSGthlj2KBYX5hlKTAoJvJ7NULPL+Fs7dkHJbnkytvcq8oerdclnn1olCnVTuMjG704XesQvH5jbplTbkeI4sDtqCTTH30ARq5TTuN0CpPBUr3qWJetQNmLJ5sRe3Qm62CMOz4mlPp2W4yjnbmsJQc7yP3TGuy19oGhuBJiCTxoF1apP8GbN
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Question 1.8

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1.3 Driving Question 2:

Driving Question 2

What are the features of bacteria and of archaea?

Why should you care?

Bacteria are incredibly diverse and are adapted to an enormous variety of lifestyles. Many people only know of the bacteria that are pathogens and cause disease, but there are many other types of bacteria. Many different kinds of bacteria, including some of the photosynthetic cyanobacteria, are able to convert nitrogen gas from the atmosphere to ammonia or nitrate in a process called nitrogen fixation. Since plants need nitrogen, but cannot use it directly from the atmosphere, nitrogen fixation is essential for plants, the basis of all ecosystems on land, to be able to grow. Knowing that bacteria are diverse will help you understand that most of them are beneficial.

Archaea represent a new frontier in biology and science in general. In the past few decades, they have gone from being largely ignored, overlooked, and misunderstood to becoming a highly studied group. Their importance to life on Earth is becoming increasingly apparent.

What should you know?

To fully answer this Driving Question, you should be able to:

  1. Describe the many adaptations that different bacteria have evolved to succeed in a variety of habitats.
  2. Explain how archaea have evolved to live in a variety of habitats that often have extreme conditions.

Infographic Focus:

The infographics most pertinent to the Driving Question are 18.4, 18.6, and 18.7.

Question Test Your Vocabulary

Choose the correct term for each of the following definitions:

Term Definition
Jf9ii6J/U8Bvv2Q9DBIfk9gLO7DMpljMS09pN/ktd9McajyQtrdJcw4WsYOXZeCpC3B2gIXhDmt9voJnOpStifG/WehWxWdxiVtxNbqXMSi+pC73LCMTK4jRwwrOmrKBqHdqUT7WDkE= A disease-causing agent, usually an organism.
HYbfSgv9xE+VUtchcmJtyjh9DBMruTH/lWdw2/F+9J/4hj1hptAbARcYUF5zRVXZfdu6mWM/VRP4YoBSeR1ZfZYjkNjKF1CkM7Uh8Ct313ag8h0TLeVGiHblikhE1tBXavIDEtVvY9Y= Short, hairlike appendages extending from the surface of some bacteria, used to adhere to surfaces.
WQvGXmMo4s8OfUyAo9sPILD0Xyjr5ci3HDDMjWF1yRqA5sf2rxkRKIUA2aHJ4TpK/1V6+vWyVe3f1U0NNal5wuTpolaNuCHVF7oE3vy65f0UzIG221VlEEmV6RJ6eYU/NW6bqtuRXTc= The conversion of atmospheric nitrogen into a form that plants can use for growth.
6pCNfRG+qwX493vgcsST8yfY4zEUSXDJBYKrECrd2NCYq+HRy76wMoj4CtBMQOMyPtZN9PtgW6rVUmeSSS6KCgJXxmNPUOdfPDX+T0I+sZjdJjOlXD3IzkiwNGuJCT901Q0vh817d+8= Whiplike appendages extending from the surface of some bacteria, used in movement of the cell.
XifHCvyEvBpKu8sJVSJ14abxyg2fQnt5wisVDSW6G7VjGhuu3+1eB/AV6fxwQgYaJLA7Ea+gn3nuzLTzF+/tgjdNjmlz8Gq9igmfSf7KDpNqHKQJGOGNP11Wo328SnvmvHuErRoeJgk= A relationship in which two different organisms live together, often interdependently.
ZExyxRCBYYot9h8YMnuMd2T4ls6DGEORPMaDnG5T5iedAnxoN5kjJ5h71fFBLGeaOg4hlA/IZdmOVOg2Z8CuXjIqURmE2FUAATPgsj5M3vrsCAMI//1nZ8MnhzH1ZP/dcytvqgpee2g= A sticky coating surrounding some bacterial cells that adheres to surfaces.
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Describe the many adaptations that different bacteria have evolved to succeed in a variety of habitats.

Question 1.9

What are the different keys to bacterial success? Match each of the following descriptions to the adaptation:

Process that allows the production of carbohydrates from carbon dioxide and water using sunlight vJ6CKJCXFQTVPLVl7qj5ad4BTSsKxgQrHLD19F56BgGqMl3R6ZZisPWVuKIA/NTvQ4WvMkUghGlcxLrax3vRyDps6K7yHV1Tlccx7vgLfQ0ddEUaYI7n5GofLW4Z1yk13GGmL5sy+ZCCq/f0cz5bMOKzEMY=
Whip-like appendages used to propel the organism through a wet environment 8oXOdeTrP2qtZFC/3tMVS5WU9ZO9QDfWLmYdwR4A35EpyxLWGKaaymg8l0CrRUheTzFZxuWMZEf3JUP+gThEvnptz6kTmiyEWEipdlR4MDXnlwZf2jX0vTCLn99JtDO0/0OnbwOxcq30xNx9pHpYOaVN8DI=
Process of coexisting with another organism NhF6fpgEseDrJeMgUM4NkzRpQKmUn/UOCCT7IAiaMwZrIwH8bk3ZiQikv6b1PEikWBY0zPASaabh1EUzDBWL3QTNhz2dfLFfkqe4dGfin7KFbL/DpoEZkC4V6BYphyK/hjWsVsCmfNShVG6DgAaWnuun658=
The making of either alcohol or organic acids (which taste sour) from a food source xT5NGWcDzyVxFPeEbdSXKodWfBH9UsFe7lPEPu1stp0Z3lyaB28j7HHY34QPu41Q+HTGZYDuLhTcefZaOSX4Cm65ewy4ZzNXalPHFY90YgFOgl2y8iMV1gRwwqikZOXAOlUR4PKdTVVJTEbEjGa6YwwHo1U=
An enclosing sheath of substances that are often sticky and allow the organism to adhere to a surface RPt7nidJgUH8i5M9WnHqPdDGWqqNd8WjTjD2adrYg9uB7mNNB9D2xM+4thEsPFygnsMTUXueiGHq4nr32z5DEq1eIIAnWdU3bCmGmYwFJYpR1Mwecc35fPgkkwY1rMQFn6sUrnv1WlzuxAusOwRYBgYWCho=
An organism that may cause a disease, either by producing a toxin or by another means Cz7azyShHhuI9G3tNfYW0WY98ik8eLLuGExoJixUQ3WeJbhQxdBCrwkJUk+0HQIksFFOwfkOMckz4OwSWwbRqYdzI6mSk7//HSRzB5Eaw1nxDLpTQ5XL//1S4kYG/itls458y60bbbdQ0ldQNGf84yz4Mkk=
A short, tube-like appendage that can be used for adhering to a surface IaaHHTWhGAJpnqzze81bHRdmLclZobP3bUQ9/wSbHJJwe3GmLb1WfvDFihJAnbnllga5qmc7P8hCTfLuGh5LDvI4sLkJuX/TbYK/aI/ry5/bXol0ufUDMx2W42LI/+hMgzNa34YbHouVTdbpk1aFZvrKoMQ=
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Question 1.10

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An effective antibiotic that targets all species of bacteria would be one that does not target characteristics that only some bacteria have, like flagella. Rather, the antibiotic would have to target a process that is common and indispensible to all bacteria AND is not present in eukaryotic cells. Perhaps something relating to bacterial DNA replication, or a component of the cell wall.

Explain how archaea have evolved to live in a variety of habitats that often have extreme conditions.

Question 1.11

For each type of extremophile archaea listed below, give a short description of where they live and the special adaptations they need to have:

Archaea Group Description
Halophiles gzSKVBDrvH01RmKU
Hyperthermophiles gzSKVBDrvH01RmKU
Methanogens gzSKVBDrvH01RmKU
Table
Archaea Group Description
Halophiles Salt-loving archaea. They live in places with high salt concentrations, like evaporated seawater ponds, or salt lakes.

These archaea have to be very efficient in maintaining the concentration of water inside the cell.
Hyperthermophiles Heat-loving archaea. They live in places where high temperatures are common and persistent, like ocean vents and geysers.

They would have to have a way to prevent the denaturing of proteins that typically occurs at temperature levels such as these.
Methanogens Can live in extreme habitats, like ocean vents. They convert inorganic carbon dioxide and hydrogen to a usable form for energy. In this process, they produce methane.

They would need a metabolic process to convert the inorganic compounds to usable forms.
Table

Question 1.12

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There are many species of archaea that live in "mundane" environments like soil and intestinal tracts. It is just that their extreme environment-loving relatives get the most press.

Question 1.13

Suffixes: The three examples of extremophile archaea in Infographic 18.7 have either "-ophile" or "-ogen" in their name. What do you think these suffixes mean? (You many need to refer to a dictionary.)

-ophile:uPCA0QzeItJpINqt

-ogen:Rh4kV2/nQ9Cp+EG0naOSRg==

Correct.
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Review Questions

Question 1.14

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Question 1.15

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1.4 Driving Question 3:

Driving Question 3

What are the challenges faced by organisms living at Lost City, and how do they face them?

Why should you care?

Most evidence available suggests that life began in water; oxygen was scarce, but other compounds and elements, like methane or hydrogen, may have been more plentiful than today. Knowing about how prokaryotes live at Lost City may provide knowledge of how life began.

What should you know?

To fully answer this Driving Question, you should be able to:

  1. Describe the extreme conditions created by the hydrothermal vents of Lost City.
  2. Describe the abiotic processes and conditions at Lost City that allow life to exist.
  3. Explain how autotrophs at Lost City obtain energy without sunlight.
  4. Explain how heterotrophic archaea at Lost City can extract energy from food without oxygen.
  5. Connect abiotic processes and conditions at Lost City to the lives of the organisms there.

Infographic Focus:

The infographics most pertinent to the Driving Question are 18.1, 18.2, and 18.8.

Describe the extreme conditions created by the hydrothermal vents of Lost City.

Question 1.16

Name three extreme conditions at Lost City, and explain their cause.

vtwCBdfyStU= NQIubFcO+Ac= 6I2HBGt4S3Y=
1. Low oxygen: Oxygen can only diffuse through water; Lost City is very deep and thus has a low concentration of oxygen in the water.
Occurs when rocks beneath Earth’s crust come in contact with seawater.
High temperatures are also produced by rocks beneath Earth’s crust reacting with seawater.

Describe the abiotic processes and conditions at Lost City that allow life to exist.

Question 1.17

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Serpentinization is a geochemical process that occurs when a rock from beneath Earth’s crust comes in contact with seawater. This process generates a lot of heat, releases hydrogen gas, and produces hydrocarbons like methane and simple organic molecules, which the species of arachaea and bacteria that live there can utilize.

Question 1.18

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The abiotic synthesis of carbon molecules needs hydrogen gas, which is produced by the reaction of rocks from Earth’s crust and seawater, and carbon from rocks or seawater.

Explain how autotrophs at Lost City obtain energy without sunlight.

Question 1.19

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Hydrogen and carbon dioxide.

Question 1.20

KAvCpzhmf/qBgvLdo+npywQ5ur2gEPVv+R64kmn9ja6e9KCvSwhRZ9po7nE=
Methane.

Explain how heterotrophic archaea at Lost City can extract energy from food without oxygen.

Question 1.21

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Hydrogen gas.

Review Questions

Question 1.22

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Question 1.23

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Question 1.24

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