The activity of the Calvin cycle is coordinated with the light reaction of photosynthesis. Reduced thioredoxin formed by the light-driven transfer of electrons from ferredoxin activates enzymes of the Calvin cycle by reducing disulfide bridges. The light-induced increase in pH and Mg2+ levels of the stroma is important in stimulating the carboxylation of ribulose 1,5-bisphosphate by rubisco.
Rubisco also catalyzes a competing oxygenase reaction, which produces phosphoglycolate and 3-phosphoglycerate. The recycling of phosphoglycolate leads to the release of CO2 and further consumption of O2 in a process called photorespiration. This wasteful side reaction is minimized in tropical plants, which have an accessory pathway—the C4 pathway—for concentrating CO2 at the site of the Calvin cycle. This pathway enables tropical plants to take advantage of high levels of light and minimize the oxygenation of ribulose 1,5-bisphosphate. Other plants, including some that grow in arid ecosystems, employ crassulacean acid metabolism to prevent dehydration. In CAM plants, the C4 pathway is active during the night, when the plant exchanges gases with the air. During the day, gas exchange is eliminated and CO2 is generated from malate stored in vacuoles.